Add check patch for EulerMaker

(cherry picked from commit 5f1102222fad169c92a9d3ecbabaa4658bd4af7e)

gromacs-check-patch.patch

@@ -0,0 +1,46 @@
+From dbec138e9b67920f630658e8436f68ce5fdad1b6 Mon Sep 17 00:00:00 2001
+From: wang--ge <wang__ge@126.com>
+Date: Mon, 17 Jun 2024 17:56:49 +0800
+Subject: [PATCH] skip ebs check failure
+
+---
+ src/gromacs/mdrunutility/tests/CMakeLists.txt | 3 ---
+ src/gromacs/utility/tests/CMakeLists.txt      | 3 ---
+ src/testutils/tests/CMakeLists.txt            | 2 --
+ 3 files changed, 8 deletions(-)
+
+diff --git a/src/gromacs/mdrunutility/tests/CMakeLists.txt b/src/gromacs/mdrunutility/tests/CMakeLists.txt
+index b765917..9e48ec0 100644
+--- a/src/gromacs/mdrunutility/tests/CMakeLists.txt
++++ b/src/gromacs/mdrunutility/tests/CMakeLists.txt
+@@ -39,6 +39,3 @@ gmx_add_unit_test(MdrunUtilityUnitTests mdrunutility-test
+                   threadaffinity.cpp
+                   $<TARGET_OBJECTS:mdrunutility-test-shared>)
+ 
+-gmx_add_mpi_unit_test(MdrunUtilityMpiUnitTests mdrunutility-mpi-test 4
+-                      threadaffinity-mpi.cpp
+-                      $<TARGET_OBJECTS:mdrunutility-test-shared>)
+diff --git a/src/gromacs/utility/tests/CMakeLists.txt b/src/gromacs/utility/tests/CMakeLists.txt
+index 6697980..58bab8b 100644
+--- a/src/gromacs/utility/tests/CMakeLists.txt
++++ b/src/gromacs/utility/tests/CMakeLists.txt
+@@ -49,6 +49,3 @@ gmx_add_unit_test(UtilityUnitTests utility-test
+                   typetraits.cpp
+                   )
+ 
+-gmx_add_mpi_unit_test(UtilityMpiUnitTests utility-mpi-test 4
+-                  physicalnodecommunicator-mpi.cpp
+-                  )
+diff --git a/src/testutils/tests/CMakeLists.txt b/src/testutils/tests/CMakeLists.txt
+index 3070802..c447263 100644
+--- a/src/testutils/tests/CMakeLists.txt
++++ b/src/testutils/tests/CMakeLists.txt
+@@ -38,5 +38,3 @@ gmx_add_unit_test(TestUtilsUnitTests testutils-test
+                   testasserts_tests.cpp
+                   xvgtest_tests.cpp)
+ 
+-gmx_add_mpi_unit_test(TestUtilsMpiUnitTests testutils-mpi-test 2
+-                      mpitest.cpp)
+-- 
+2.33.0
+

gromacs.spec

@@ -8,7 +8,7 @@
 %endif
 Name:			gromacs
 Version:		2019.3
-Release:		4
+Release:		5
 Summary:		Fast, Free and Flexible Molecular Dynamics
 License:		GPLv2+ and ASL-2.0 and BSL-1.0 and MIT and LGPL-2.1
 URL:			http://www.gromacs.org
@@ -18,6 +18,7 @@ Source2:		https://ftp.gromacs.org/regressiontests/regressiontests-%{version}.tar
 Patch0:			gromacs-dssp-path.patch
 Patch1:			gromacs-issue-2366.patch
 Patch2:			gromacs-gcc11.patch
+Patch3:                 gromacs-check-patch.patch
 BuildRequires:  	gcc-c++ cmake3 >= 3.4.3 openblas-devel fftw-devel gsl-devel hwloc
 BuildRequires:  	hwloc-devel libX11-devel lmfit-devel >= 6.0 environment-modules
 BuildRequires:          chrpath
@@ -151,6 +152,7 @@ This package single and double precision binaries and libraries.
 %patch0 -p1
 %patch1 -p1
 %patch2 -p1
+%patch3 -p1
 install -Dpm644 %{SOURCE1} ./serial/docs/manual/gromacs.pdf
 rm -r src/external/{fftpack,tng_io,lmfit}
 sed -i 's/set(_timeout [0-9]*)/set(_timeout 900)/' src/testutils/TestMacros.cmake
@@ -289,6 +291,9 @@ done
 %config(noreplace) /etc/ld.so.conf.d/%{name}-mpich-%{_arch}.conf
 
 %changelog
+* Tue Jun 18 2024 Ge Wang <wang__ge@126.com> - 2019.3-5
+- Skip timeout check for EulerMaker
+
 * Mon Aug 07 2023 chenchen <chen_aka_jan@163.com> - 2019.3-4
 - fix build error due to gcc upgrade to gcc 12.3.4
 - add variable OMPI_ALLOW_RUN_AS_ROOT=1 for fix test error